According to the country's civil aviation authority, operations will resume at 5 PM UAE time on Friday.
On Thursday several UAE carriers were allowed to leave the country.
However the planes were flying without passengers with pilots only permitted to bring the aircraft safely home.
Air Arabia's flight G9825 was the first plane to leave Peshawar, bound for the emirate of Ras Al Khaimah.
Emirates flight EK637 also took off from the city, heading to Dubai.

Zambia steps up Ebola screening as neighbouring Congo sees cases rise
Pentagon chief says US ready to restart strikes on Iran if no deal
Flights briefly halted at Munich Airport over possible drone sighting
Myanmar's junta chief turned president heads to India
