According to the country's civil aviation authority, operations will resume at 5 PM UAE time on Friday.
On Thursday several UAE carriers were allowed to leave the country.
However the planes were flying without passengers with pilots only permitted to bring the aircraft safely home.
Air Arabia's flight G9825 was the first plane to leave Peshawar, bound for the emirate of Ras Al Khaimah.
Emirates flight EK637 also took off from the city, heading to Dubai.

Climate crisis is 'outrunning us', UN chief warns COP31
US House blocks bid to impeach Defence Secretary Hegseth
Threats sent to UK and Irish schools dismissed as hoax
Former Pakistan PM Imran Khan back in jail after medical treatment, sources say
